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 saved dicom image file is corrupted

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T O P I C    R E V I E W
jwest Posted - Jun 01 2016 : 07:33:38
Hi,

I have the next file:
Original: 1.3.46.670589.30.1.6.1.116520970982.1427540575890.1_0001_000001_142754706229a7.dcm

I load this file with imageenvect, and next I save it to "FILE0.dcm"

link to files: https://www.dropbox.com/s/dc36m37eyd3tfoa/sampledicom.zip?dl=0

I use the next code to save the file:
var ddIm:TImageEnVect;         
...
fname := 'FILE0.dcm' ;
ddIm.IO.Params.DICOM_Range:=iedrAdjust;
ddIm.io.SaveToFileDICOM(fname);


Next, I close my app and When I tried read load the FILE0.DCM again into TImageEnvect I get an out of memory error.

If I try to parse the "file0.dcm" with dcm4che I get this log:


08:17:21,300 WARN - Unrecogniced VR code: {0}H - treat as UN
08:17:21,340 WARN - IOException during read of (2001,0010) #1818847312 @ 2614
java.io.EOFException
at org.dcm4che3.util.StreamUtils.readFully(StreamUtils.java:63)
at org.dcm4che3.io.DicomInputStream.readFully(DicomInputStream.java:383)
at org.dcm4che3.io.DicomInputStream.readValue(DicomInputStream.java:711)
at org.dcm4che3.io.DicomInputStream.readValue(DicomInputStream.java:536)
at org.dcm4che3.io.DicomInputStream.readAttributes(DicomInputStream.java:497)
at org.dcm4che3.io.DicomInputStream.readValue(DicomInputStream.java:591)
at org.dcm4che3.io.DicomInputStream.readSequence(DicomInputStream.java:648)
at org.dcm4che3.io.DicomInputStream.readValue(DicomInputStream.java:517)
at org.dcm4che3.io.DicomInputStream.readAttributes(DicomInputStream.java:497)
at org.dcm4che3.io.DicomInputStream.readValue(DicomInputStream.java:591)
at org.dcm4che3.io.DicomInputStream.readSequence(DicomInputStream.java:648)
at org.dcm4che3.io.DicomInputStream.readValue(DicomInputStream.java:517)
at org.dcm4che3.io.DicomInputStream.readAttributes(DicomInputStream.java:497)
at org.dcm4che3.io.DicomInputStream.readDataset(DicomInputStream.java:425)
at org.dcm4che3.tool.dcmdir.DcmDir.addReferenceTo(DcmDir.java:405)
at org.dcm4che3.tool.dcmdir.DcmDir.main(DcmDir.java:211)

failed to parse C:\FILE0.DCM: null



Dump of the file0.dcm:
C:\dcm4che-3.3.7\bin>dcmdump C:\file0.dcm
0: [0\0\0\0\0\0\0\0\0\0\0\0\0\0\0\0\0\0\0\0\0\0\0\0\0\0\0\0\0\0\0\0\0\0\0\0\0\
132: (0002,0000) UL #4 [198] FileMetaInformationGroupLength
144: (0002,0001) OB #2 [0\1] FileMetaInformationVersion
158: (0002,0002) UI #26 [1.2.840.10008.5.1.4.1.1.1] MediaStorageSOPClassUID
192: (0002,0003) UI #52 [1.3.46.670589.30.1.6.1.116520970982.1427540575781.2]
252: (0002,0010) UI #20 [1.2.840.10008.1.2.1] TransferSyntaxUID
280: (0002,0012) UI #34 [1.2.826.0.1.3680043.2.135.1066.101] ImplementationCla
322: (0002,0013) SH #12 [1.4.16/WIN32] ImplementationVersionName
342: (0008,0000) UL #4 [506] GroupLength
354: (0008,0008) CS #18 [ORIGINAL\PRIMARY\] ImageType
380: (0008,0016) UI #26 [1.2.840.10008.5.1.4.1.1.1] SOPClassUID
414: (0008,0016) UI #24 [1.2.840.10008.3.1.2.3.3] SOPClassUID
446: (0008,0016) UI #28 [1.2.840.10008.5.1.4.1.1.11.1] SOPClassUID
482: (0008,0018) UI #52 [1.3.46.670589.30.1.6.1.116520970982.1427540575781.2]
542: (0008,0018) UI #52 [1.3.46.670589.30.1.6.1.116520970982.1427540449921.1]
602: (0008,0018) UI #52 [1.3.46.670589.30.1.6.1.116520970982.1427540576406.1]
662: (0008,0020) DA #8 [20150328] StudyDate
678: (0008,0021) DA #8 [20150328] SeriesDate
694: (0008,0022) DA #8 [20150328] AcquisitionDate
710: (0008,0023) DA #8 [20150328] ContentDate
726: (0008,0030) TM #14 [110228.375000] StudyTime
748: (0008,0031) TM #14 [110233.000000] SeriesTime
770: (0008,0032) TM #6 [110234] AcquisitionTime
784: (0008,0033) TM #6 [110234] ContentTime
798: (0008,0050) SH #0 [] AccessionNumber
806: (0008,0060) CS #2 [CR] Modality
816: (0008,0070) LO #24 [Philips Medical Systems] Manufacturer
848: (0008,0080) LO #18 [Clinica OrtoCenter] InstitutionName
874: (0008,0081) ST #44 [Estrada dos Tres Rios Rio de Janeiro Brasil] Institut
926: (0008,0090) PN #0 [] ReferringPhysicianName
934: (0008,1010) SH #8 [Direct01] StationName
950: (0008,1030) LO #6 [Ombro] StudyDescription
964: (0008,103E) LO #10 [AP Neutra] SeriesDescription
982: (0008,1040) LO #10 [Radiologia] InstitutionalDepartmentName
1000: (0008,1050) PN #0 [] PerformingPhysicianName
1008: (0008,1070) PN #4 [user] OperatorsName
1020: (0008,1090) LO #12 [Compacto DR] ManufacturerModelName
1040: (0008,1111) SQ #100 ReferencedPerformedProcedureStepSequence
1052: (FFFE,E000) #92 Item #1
1060: >(0008,1150) UI #24 [1.2.840.10008.3.1.2.3.3] ReferencedSOPClassUID
1092: >(0008,1155) UI #52 [1.3.46.670589.30.1.6.1.116520970982.1427540449921.1
1152: (0008,1115) SQ #182 ReferencedSeriesSequence
1164: (FFFE,E000) #174 Item #1
1172: >(0008,1140) SQ #102 ReferencedImageSequence
1184: >(FFFE,E000) #94 Item #1
1192: >>(0008,1150) UI #26 [1.2.840.10008.5.1.4.1.1.1] ReferencedSOPClassUID
1226: >>(0008,1155) UI #52 [1.3.46.670589.30.1.6.1.116520970982.1427540575781.
1286: >(0020,000E) UI #52 [1.3.46.670589.30.1.6.1.116520970982.1427540575890.1
1346: (0010,0000) UL #4 [164] GroupLength
1358: (0010,0010) PN #22 [ANTONIO MAZI DOMINGUES] PatientName
1388: (0010,0020) LO #6 [269321] PatientID
1402: (0010,0030) DA #8 [20150328] PatientBirthDate
1418: (0010,0040) CS #2 [M] PatientSex
1428: (0010,1000) LO #0 [] OtherPatientIDs
1436: (0010,1010) AS #4 [000D] PatientAge
1448: (0010,1020) DS #4 [0.0] PatientSize
1460: (0010,1030) DS #4 [0.0] PatientWeight
1472: (0010,2000) LO #0 [] MedicalAlerts
1480: (0010,2110) LO #0 [] Allergies
1488: (0010,2160) SH #0 [] EthnicGroup
1496: (0010,21B0) LT #0 [] AdditionalPatientHistory
1504: (0010,21C0) US #2 [4] PregnancyStatus
1514: (0010,4000) LT #0 [] PatientComments
1522: (0018,0000) UL #4 [270] GroupLength
1534: (0018,0015) CS #8 [SHOULDER] BodyPartExamined
1550: (0018,0060) DS #4 [0.0] KVP
1562: (0018,1000) LO #12 [116520970982] DeviceSerialNumber
1582: (0018,1020) LO #32 [2.0.0\PMS81.101.1.1 GXR GXRIM7.0] SoftwareVersions
1622: (0018,1030) LO #6 [Ombro] ProtocolName
1636: (0018,1050) DS #6 [0.182] SpatialResolution
1650: (0018,1150) IS #2 [0] ExposureTime
1660: (0018,1152) IS #2 [0] Exposure
1670: (0018,1153) IS #2 [0] ExposureInuAs
1680: (0018,1164) DS #12 [0.182\0.182] ImagerPixelSpacing
1700: (0018,1166) CS #4 [NONE] Grid
1712: (0018,1400) LO #64 [UNIQUE: S:200 L:4.0 FB d:1 g:1,37 sb:4,19 eq:1 nr:0
1784: (0018,1405) IS #4 [122] RelativeXRayExposure
1796: (0018,5101) CS #0 [] ViewPosition
1804: (0020,0000) UL #4 [176] GroupLength
1816: (0020,000D) UI #52 [1.3.46.670589.30.1.6.1.116520970982.1427540418156.1]
1876: (0020,000E) UI #52 [1.3.46.670589.30.1.6.1.116520970982.1427540575890.1]
1936: (0020,0010) SH #12 [S-I7SWPG8C.1] StudyID
1956: (0020,0011) IS #2 [1] SeriesNumber
1966: (0020,0013) IS #2 [1] InstanceNumber
1976: (0020,0013) IS #2 [1] InstanceNumber
1986: (0020,0020) CS #0 [] PatientOrientation
1994: (0020,0060) CS #0 [] Laterality
2002: (0028,0000) UL #4 [222] GroupLength
2014: (0028,0002) US #2 [1] SamplesPerPixel
2024: (0028,0004) CS #12 [MONOCHROME2] PhotometricInterpretation
2044: (0028,0006) US #2 [0] PlanarConfiguration
2054: (0028,0008) IS #2 [1] NumberOfFrames
2064: (0028,0010) US #2 [2350] Rows
2074: (0028,0011) US #2 [1893] Columns
2084: (0028,0030) DS #32 [0.1730654545455\0.1730654545455] PixelSpacing
2124: (0028,0100) US #2 [16] BitsAllocated
2134: (0028,0101) US #2 [16] BitsStored
2144: (0028,0102) US #2 [11] HighBit
2154: (0028,0103) US #2 [0] PixelRepresentation
2164: (0028,0300) CS #2 [NO] QualityControlImage
2174: (0028,0301) CS #2 [NO] BurnedInAnnotation
2184: (0028,1054) LO #2 [US] RescaleType
2194: (0028,2110) CS #2 [00] LossyImageCompression
2204: (0032,0000) UL #4 [24] GroupLength
2216: (0032,1032) PN #0 [] RequestingPhysician
2224: (0032,1033) LO #0 [] RequestingService
2232: (0032,1060) LO #0 [] RequestedProcedureDescription
2240: (0038,0000) UL #4 [16] GroupLength
2252: (0038,0050) LO #0 [] SpecialNeeds
2260: (0038,0500) LO #0 [] PatientState
2268: (0040,0000) UL #4 [184] GroupLength
2280: (0040,0241) AE #6 [Eleva] PerformedStationAETitle
2294: (0040,0244) DA #8 [20150328] PerformedProcedureStepStartDate
2310: (0040,0245) TM #14 [110228.375000] PerformedProcedureStepStartTime
2332: (0040,0252) CS #0 [] PerformedProcedureStepStatus
2340: (0040,0253) SH #12 [E-I7SWQ4QP.1] PerformedProcedureStepID
2360: (0040,0254) LO #6 [Ombro] PerformedProcedureStepDescription
2374: (0040,0301) US #2 [1] TotalNumberOfExposures
2384: (0040,0321) SQ #0 FilmConsumptionSequence
2396: (0040,1001) SH #0 [] RequestedProcedureID
2404: (0040,1002) LO #0 [] ReasonForTheRequestedProcedure
2412: (0040,1003) SH #0 [] RequestedProcedurePriority
2420: (0040,1004) LO #0 [] PatientTransportArrangements
2428: (0040,1010) PN #0 [] NamesOfIntendedRecipientsOfResults
2436: (0040,1400) LT #0 [] RequestedProcedureComments
2444: (0040,2001) LO #0 [] ReasonForTheImagingServiceRequest
2452: (0040,2004) DA #0 [] IssueDateOfImagingServiceRequest
2460: (0040,2400) LT #0 [] ImagingServiceRequestComments
2468: (0070,0001) SQ #190 GraphicAnnotationSequence
2480: (FFFE,E000) #182 Item #1
2488: >(0070,0002) CS #16 [ANNOTATION_LAYER] GraphicLayer
2512: >(0070,0008) SQ #146 TextObjectSequence
2524: >(FFFE,E000) #138 Item #1
2532: >>(0070,0004) CS #6 [PIXEL] AnchorPointAnnotationUnits
2546: >>(0070,0006) ST #2 [D] UnformattedTextValue
2556: >>(0070,0010) FL #8 [532.039\576.3286] BoundingBoxTopLeftHandCorner
2572: >>(0070,0011) FL #8 [591.039\647.3286] BoundingBoxBottomRightHandCorner
2588: >>(0070,0014) FL #8 [0.29663974\0.2603526] AnchorPoint
2604: >>(0070,0015) CS #2 [N] AnchorPointVisibility
08:35:48,528 WARN - Unrecogniced VR code: {0}H - treat as UN
08:35:48,569 WARN - IOException during read of (2001,0010) #1818847312 @ 2614
java.io.EOFException
at org.dcm4che3.util.StreamUtils.readFully(StreamUtils.java:63)
at org.dcm4che3.io.DicomInputStream.readFully(DicomInputStream.java:383)

at org.dcm4che3.io.DicomInputStream.readValue(DicomInputStream.java:711)

at org.dcm4che3.tool.dcmdump.DcmDump.readValue(DcmDump.java:122)
at org.dcm4che3.io.DicomInputStream.readAttributes(DicomInputStream.java
:497)
at org.dcm4che3.io.DicomInputStream.readValue(DicomInputStream.java:591)

at org.dcm4che3.tool.dcmdump.DcmDump.readValue(DcmDump.java:149)
at org.dcm4che3.io.DicomInputStream.readSequence(DicomInputStream.java:6
48)
at org.dcm4che3.io.DicomInputStream.readValue(DicomInputStream.java:517)

at org.dcm4che3.tool.dcmdump.DcmDump.readValue(DcmDump.java:111)
at org.dcm4che3.io.DicomInputStream.readAttributes(DicomInputStream.java
:497)
at org.dcm4che3.io.DicomInputStream.readValue(DicomInputStream.java:591)

at org.dcm4che3.tool.dcmdump.DcmDump.readValue(DcmDump.java:149)
at org.dcm4che3.io.DicomInputStream.readSequence(DicomInputStream.java:6
48)
at org.dcm4che3.io.DicomInputStream.readValue(DicomInputStream.java:517)

at org.dcm4che3.tool.dcmdump.DcmDump.readValue(DcmDump.java:111)
at org.dcm4che3.io.DicomInputStream.readAttributes(DicomInputStream.java
:497)
at org.dcm4che3.io.DicomInputStream.readDataset(DicomInputStream.java:42
5)
at org.dcm4che3.tool.dcmdump.DcmDump.parse(DcmDump.java:87)
at org.dcm4che3.tool.dcmdump.DcmDump.main(DcmDump.java:245)
dcmdump: null
1   L A T E S T    R E P L I E S    (Newest First)
xequte Posted - Jun 06 2016 : 17:59:20
Thanks. This is due to the propietary tags in the file. The latest beta copes with these kinds of files. Email me for the source.


Nigel
Xequte Software
www.xequte.com
nigel@xequte.com